PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g05630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 190aa    MW: 21127.5 Da    PI: 5.1196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g05630genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-052951123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ Fs+   L  H++ H
  CA09g05630 29 YRCSFCKRGFSNAQALGGHMNIH 51
                9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-62755No hitNo description
Gene3DG3DSA:3.30.160.601.8E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4682956IPR007087Zinc finger, C2H2
SMARTSM003550.00532951IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MENDPNSSNS KKYQITWNAN EGISQVKCYR CSFCKRGFSN AQALGGHMNI HRKDRAKLRE  60
ISIETSDIKK SISPSPDIPA PSSTDELLQQ EVSSDETSSP SKRPCITLEE QHQHHHPNPI  120
SQEKDENHGL IIGGDLLQLP LFVDTPSKEV INLIETQEGN KDMQLSVDSK LDLELRLGPE  180
PSESSEKPQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-100HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541384.11e-135PREDICTED: transcriptional regulator TAC1-like
TrEMBLM1AH565e-85M1AH56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000227401e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-17C2H2 family protein